It occurred to me recently while looking through Japanese the Manga Way that while I'm not yet at this point yet, I'm going to need to stop restructuring everything to make sense in English and adapt my own thinking to follow Japanese sentences naturally. With very simple sentences it's easy enough to reform the words in my head, but as soon as you start adding more advanced grammar it takes a sentence diagram to put it all together.
Again I'm not really too concerned at this point, because I'm still a beginner and I have a ton of vocab to learn first. I'm learning about grammar mainly to become familiar with the concepts as early as I can. But that doesn't necessarily mean there's nothing I can do now to begin to "think in Japanese". For example, I'd like to train myself to expect subject-object-verb sentence compositions, instead of always jumping ahead to the verb. I think this would help me to follow the language more easily. Do the experts here have any good methods to accomplish this? I assume that writing and speaking Japanese are both vital, but are there any particularly effective exercises people have discovered?